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Publications


Cieslak, M. C., Castelfranco, A. M., Roncalli, V., Lenz, P. H., & Hartline, D. K. (2019). t-Distributed Stochastic Neighbor Embedding (t-SNE): A tool for eco-physiological transcriptomic analysis. Marine Genomics, 100723. https://doi.org/10.1016/j.margen.2019.100723
Coyle, K. O., Hermann, A. J., & Hopcroft, R. R. (2019). Modeled spatial-temporal distribution of productivity, chlorophyll, iron and nitrate on the northern Gulf of Alaska shelf relative to field observations. Deep Sea Research Part II: Topical Studies in Oceanography, 165, 163–191. https://doi.org/10.1016/j.dsr2.2019.05.006
Doyle, M. J., Strom, S. L., Coyle, K. O., Hermann, A. J., Ladd, C., Matarese, A. C., … Hopcroft, R. R. (2019). Early life history phenology among Gulf of Alaska fish species: Strategies, synchronies, and sensitivities. Deep Sea Research Part II: Topical Studies in Oceanography, 165, 41–73. https://doi.org/10.1016/j.dsr2.2019.06.005
Lenz, P. H., & Roncalli, V. (2019). Diapause within the Context of Life-History Strategies in Calanid Copepods (Calanoida: Crustacea). The Biological Bulletin, 237(2), 170–179. https://doi.org/10.1086/705160
Litzow, M. A., Hunsicker, M. E., Ward, E. J., Sean C. Anderson, Gao, J., McClatchie, S., … O’Malley, R. Evaluating ecosystem change as Gulf of Alaska temperature exceeds the limits of preindustrial variability. Prog. Oceanogr.
Roncalli, V., Sommer, S. A., Cieslak, M. C., Clarke, C., Hopcroft, R. R., & Lenz, P. H. (2018). Physiological characterization of the emergence from diapause: A transcriptomics approach. Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-30873-0
Roncalli, V., Cieslak, M. C., Germano, M., Hopcroft, R. R., & Lenz, P. H. (2019). Regional heterogeneity impacts gene expression in the subarctic zooplankter Neocalanus flemingeri in the northern Gulf of Alaska. Communications Biology, 2(1). https://doi.org/10.1038/s42003-019-0565-5
Roncalli, V., Cieslak, M. C., Sommer, S. A., Hopcroft, R. R., & Lenz, P. H. (2018). De novo transcriptome assembly of the calanoid copepod Neocalanus flemingeri: A new resource for emergence from diapause. Marine Genomics, 37, 114–119. https://doi.org/10.1016/j.margen.2017.09.002
Roncalli, V., Cieslak, M. C., Hopcroft, R. R., & Lenz, P. H. (2020). Capital Breeding in a Diapausing Copepod: A Transcriptomics Analysis. Frontiers in Marine Science, 7. https://doi.org/10.3389/fmars.2020.00056

Because of the NGA’s history, additional publications are divided into several categories:

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Reports and Proposals

Reports and proposals generated by this project can be found in the Documents section of this web page.